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# Load sratookit module 
module load sratoolkit/2.10.7

# Use prefetch to download SRA file. 
prefetch --ngc ~/.ncbi/prj_phs710EA_test.ngc -p SRR1219902

# Convert SRA file to FASTQ with fastq-dump. -X 5 means only gives first five reads to give a quick test.
fastq-dump -X 5 --ngc ~/.ncbi/prj_phs710EA_test.ngc --split-files SRR1219902